Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007911.1 Corchorus capsularis cultivar CVL-1 contig07932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67530

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1808--1832
12
2.1
12
100
0
50
52
16
0
32
1.44
1839--1868
15
2.0
15
93
0
51
56
6
0
36
1.26
1853--1891
20
1.9
21
89
5
62
51
20
0
28
1.48
3978--4008
2
15.0
2
93
6
53
48
0
3
48
1.17
13581--13629
20
2.5
20
86
3
64
53
0
14
32
1.41
13836--13860
13
1.9
13
100
0
50
56
0
16
28
1.41
14993--15018
2
13.0
2
100
0
52
50
0
0
50
1.00
16660--16703
21
2.1
21
83
8
54
50
0
18
31
1.47
21203--21228
6
4.3
6
100
0
52
80
19
0
0
0.71
30747--30803
24
2.4
25
85
8
82
57
14
24
3
1.52
36150--36184
5
6.6
5
96
3
52
74
0
0
25
0.82
36278--36326
26
1.9
25
83
4
62
51
10
20
18
1.75
38982--39014
2
16.5
2
93
0
57
45
0
3
51
1.16
41177--41208
3
10.7
3
100
0
64
65
0
0
34
0.93
44224--44301
41
1.9
41
89
5
122
11
23
12
52
1.72
47556--47588
16
2.1
16
94
0
57
54
0
12
33
1.37
47617--47697
8
10.1
8
75
10
67
41
2
24
30
1.68
47575--47887
50
6.0
50
73
12
229
41
11
20
26
1.86
47617--47695
24
3.3
24
81
10
99
40
2
25
31
1.69
47657--47887
50
4.3
58
81
10
246
41
12
19
26
1.87
47746--47869
24
5.0
24
65
14
81
41
15
19
23
1.89
47872--47897
10
2.6
10
100
0
52
46
0
23
30
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47889--48075
22
9.1
20
74
14
125
43
6
21
28
1.77
47907--47974
6
10.0
6
76
20
55
47
2
19
30
1.64
47907--48169
36
6.9
36
72
15
172
44
5
20
29
1.74
47889--48148
14
18.6
14
67
19
102
44
5
20
29
1.75
47907--48169
58
4.6
59
76
11
210
44
5
20
29
1.74
48072--48117
22
2.1
21
84
8
56
43
4
19
32
1.71
48079--48128
22
2.3
22
86
6
66
48
4
16
32
1.64
48405--49123
70
10.3
70
84
4
927
29
16
26
27
1.97
48405--49123
139
5.2
139
87
5
945
29
16
26
27
1.97
49655--49756
50
2.0
50
94
3
179
34
11
16
37
1.85
49851--49877
14
1.9
14
100
0
54
40
14
7
37
1.74
52011--52036
2
13.0
2
100
0
52
50
0
0
50
1.00
54510--54545
19
1.9
18
88
5
54
41
2
22
33
1.68
55827--55860
16
2.2
16
89
5
52
29
2
8
58
1.43
59898--60010
52
2.2
52
91
0
181
38
21
14
25
1.91

Tables:   1

The End!