Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007913.1 Corchorus capsularis cultivar CVL-1 contig07934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75454

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
776--1043
103
2.6
103
89
2
398
39
17
17
26
1.91
1348--1374
2
13.5
2
100
0
54
51
0
0
48
1.00
27409--27434
6
4.3
6
100
0
52
53
0
0
46
1.00
28623--28676
27
2.2
22
70
27
54
18
38
35
7
1.79
28616--28709
33
3.0
33
77
17
119
17
38
34
10
1.84
31661--31736
2
42.0
2
69
23
53
42
0
2
55
1.14
32765--32796
2
16.0
2
93
0
55
46
0
3
50
1.17
32896--32940
21
2.1
22
87
4
65
17
28
8
44
1.79
32956--33019
33
1.9
33
90
0
101
14
42
32
10
1.80
44219--44244
2
13.0
2
100
0
52
50
0
0
50
1.00
67248--67302
27
2.0
27
82
6
67
20
16
12
50
1.77
70551--70619
23
3.0
23
93
0
120
14
34
18
31
1.91
70966--70995
2
15.0
2
100
0
60
50
0
0
50
1.00
74167--74195
1
29.0
1
100
0
58
0
0
0
100
0.00

Tables:   1

The End!