Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007914.1 Corchorus capsularis cultivar CVL-1 contig07935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46569

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2290--2315
6
4.3
6
100
0
52
34
34
0
30
1.58
19054--19096
14
2.8
16
82
13
54
16
32
2
48
1.58
19049--19124
40
1.9
39
86
2
107
17
26
5
51
1.66
23676--23783
35
3.2
31
64
28
76
37
17
0
44
1.55
23646--23782
71
1.9
70
92
1
229
36
16
0
46
1.52
23519--24053
263
2.0
253
90
7
750
34
15
3
46
1.64
23861--24108
78
3.2
78
89
2
381
36
13
0
48
1.48
28606--28644
2
19.5
2
83
0
51
41
2
53
2
1.28
30432--30475
22
2.0
22
90
0
70
9
22
13
54
1.67
33661--33780
52
2.3
52
91
2
197
48
6
17
27
1.72
33776--33879
32
2.8
40
69
26
109
50
6
17
25
1.71
34093--34145
15
3.5
15
71
5
52
58
5
22
13
1.56
34092--34161
31
2.3
31
84
0
86
55
8
21
14
1.65
34114--34300
95
1.9
95
81
6
223
56
7
20
14
1.63
34297--34357
20
3.2
20
71
23
69
59
3
19
18
1.52
34291--34398
35
3.1
36
85
8
150
55
2
24
17
1.55
34400--34433
14
2.4
14
90
0
50
58
5
23
11
1.55
34424--34454
14
2.1
15
94
5
55
54
6
19
19
1.65
34436--34538
21
5.0
21
81
9
122
50
4
23
21
1.68
34390--34475
35
2.5
35
86
5
113
54
6
20
17
1.66

Tables:   1

The End!