Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007916.1 Corchorus capsularis cultivar CVL-1 contig07937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66371

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
490--519
2
15.0
2
100
0
60
50
0
0
50
1.00
2214--2444
51
4.5
51
81
4
250
34
5
18
41
1.74
2204--2487
154
1.8
154
79
3
329
34
5
17
42
1.72
2621--2658
19
2.0
19
85
10
51
52
10
5
31
1.58
2569--2679
52
2.2
52
81
12
124
48
7
11
32
1.67
2673--2804
50
2.7
50
77
11
137
47
6
12
33
1.67
3518--3798
41
7.0
40
82
7
309
15
26
18
39
1.90
3775--3824
26
1.9
26
100
0
100
12
14
24
50
1.76
3801--3932
40
3.3
40
91
2
203
13
24
21
40
1.89
5789--5841
22
2.4
22
84
9
72
16
11
18
52
1.73
8148--8186
5
8.0
5
82
5
53
38
2
0
58
1.12
11463--11496
2
17.0
2
100
0
68
50
0
0
50
1.00
13526--14510
438
2.2
437
85
2
1287
27
13
16
42
1.86
19233--19275
2
22.0
2
86
13
63
46
2
0
51
1.13
28983--29012
15
2.1
15
93
6
53
33
0
13
53
1.40
30609--30680
34
2.1
34
92
0
117
31
20
12
34
1.90
42347--42405
3
19.7
3
92
0
100
64
0
1
33
1.04
48240--48306
21
3.2
21
72
16
75
28
11
25
34
1.91
53854--54263
75
5.5
75
87
0
579
14
27
32
25
1.95
60970--61022
21
2.6
21
87
3
72
28
32
32
7
1.85

Tables:   1

The End!