genome.fa.s7919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007919.1 Corchorus capsularis cultivar CVL-1 contig07940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53742

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7031--7066	18	2.1	17	94	5	63	11	16	8	63	1.49
13161--13211	25	2.0	27	84	7	70	19	3	9	66	1.36
14239--14345	16	6.7	17	77	6	66	11	17	33	37	1.86
14277--14345	32	2.2	32	91	0	111	10	20	36	33	1.86
14281--14344	9	7.8	9	70	19	59	10	21	34	32	1.89
14277--14376	32	3.1	32	84	5	96	10	23	35	32	1.88
14233--14383	48	3.2	46	75	13	119	10	21	33	35	1.88
15144--15181	11	3.5	11	89	10	51	39	0	2	57	1.12
15804--15921	7	14.9	8	66	20	61	9	22	37	31	1.86
15797--15936	16	8.9	14	73	18	100	8	21	39	30	1.83
15797--15936	32	4.5	31	81	4	156	8	21	39	30	1.83
15800--15921	63	1.9	63	83	3	156	9	21	37	31	1.84
15798--15936	63	2.2	62	79	7	154	8	21	39	30	1.83
19711--19741	2	15.5	2	93	0	53	48	3	0	48	1.17
20411--20451	14	3.2	13	90	10	59	90	9	0	0	0.46
20414--20450	19	1.9	19	94	0	65	89	10	0	0	0.49
20410--20452	6	7.2	6	82	10	52	86	13	0	0	0.58
29014--29158	39	3.7	39	80	10	172	36	15	15	32	1.89
29014--29158	77	1.9	77	83	8	188	36	15	15	32	1.89
29924--29972	18	2.6	18	75	18	55	51	6	8	34	1.57
30058--30124	25	2.7	25	80	0	71	50	22	11	14	1.76
30234--30274	20	2.0	20	90	0	64	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30824--30874	27	1.9	27	88	4	77	21	33	5	39	1.78
32685--32730	24	1.9	24	82	8	58	54	21	10	13	1.69
35574--35637	3	21.3	3	93	0	110	67	0	32	0	0.91
35818--35910	25	3.8	25	84	1	89	23	24	26	24	2.00
35831--35910	25	3.2	25	82	1	99	23	22	28	25	1.99
39553--39598	20	2.4	19	82	7	65	30	0	2	67	1.03
40244--40290	23	2.1	22	84	4	58	55	2	4	38	1.31
46907--47073	11	15.1	11	79	12	164	60	8	21	8	1.54
46918--46975	28	2.1	27	87	3	80	68	6	15	8	1.36
46930--46965	17	2.1	18	89	5	56	69	5	16	8	1.33
46929--47058	24	6.1	19	79	15	57	61	8	20	9	1.52
46907--47069	39	4.0	41	75	18	119	61	8	21	8	1.52
46907--47073	35	5.0	34	80	13	186	60	8	21	8	1.54
46946--47073	24	5.6	23	86	8	172	57	9	23	9	1.59
47066--47311	36	6.9	36	86	2	329	42	9	22	25	1.83
47066--47313	71	3.5	71	88	2	365	42	9	22	25	1.83
47062--47312	107	2.4	106	87	4	371	43	9	22	25	1.83
47350--47468	36	3.4	34	75	17	120	46	6	17	29	1.74
47340--47447	32	3.2	32	74	14	110	45	5	18	30	1.72
47340--47468	68	1.9	68	85	6	181	47	6	17	29	1.71

Tables:   1

The End!