Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007923.1 Corchorus capsularis cultivar CVL-1 contig07944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31557

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7817--7895
40
2.0
40
95
5
142
53
11
13
21
1.71
7881--7968
41
2.2
41
91
4
144
47
11
15
25
1.79
7905--8037
67
1.9
70
84
6
182
42
9
18
29
1.81
7975--8180
41
5.4
39
74
17
166
42
10
18
27
1.84
7881--8412
108
4.8
108
79
13
516
43
10
18
26
1.83
8055--8113
30
2.0
29
90
6
93
44
5
18
32
1.72
8014--8148
69
1.9
70
90
3
218
43
11
18
26
1.83
8082--8276
101
1.9
101
92
2
329
41
11
18
27
1.86
8183--8506
41
7.9
41
83
2
366
44
11
17
26
1.83
8183--8506
123
2.6
124
83
4
417
44
11
17
26
1.83
8541--8787
41
5.8
41
84
10
318
46
9
21
22
1.80
8783--8946
36
4.8
35
77
17
184
42
7
20
28
1.80
8783--8937
67
2.3
68
93
1
267
42
7
21
28
1.80
30516--30638
21
5.6
22
76
18
82
21
19
6
52
1.68
30550--30638
43
2.0
44
89
4
135
19
20
6
53
1.67
30633--30731
21
4.6
22
73
13
82
20
21
8
50
1.73
30515--30736
42
5.3
43
71
14
146
21
19
7
52
1.70
30769--30818
22
2.3
21
82
3
64
16
22
4
58
1.55
30748--30931
86
2.1
86
80
7
203
18
22
3
55
1.57
30859--30898
14
2.9
14
84
0
53
22
22
2
52
1.59
31108--31197
26
3.3
26
70
19
76
26
15
5
52
1.65
31018--31167
71
2.1
71
80
9
164
26
18
6
49
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31111--31361
55
4.6
55
82
4
310
23
19
8
48
1.77

Tables:   1

The End!