Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007925.1 Corchorus capsularis cultivar CVL-1 contig07946, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140277

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4690--4730
21
2.0
21
95
0
73
12
21
14
51
1.75
6309--6634
87
3.7
87
91
2
483
34
15
5
44
1.70
6309--6634
175
1.9
176
88
3
505
34
15
5
44
1.70
7074--7107
2
17.5
2
93
6
61
52
0
0
47
1.00
10952--11008
29
2.0
29
85
0
78
42
8
28
21
1.82
15659--15706
20
2.4
19
79
3
51
66
2
10
20
1.32
22713--22768
16
3.4
16
72
13
60
12
12
33
41
1.81
22696--22752
17
3.4
17
69
13
55
14
14
29
42
1.84
22691--22771
33
2.5
33
95
2
146
13
13
32
40
1.84
23419--23453
15
2.3
15
90
0
52
28
14
17
40
1.88
23858--23897
18
2.2
18
86
4
53
45
5
20
30
1.72
25814--25865
21
2.5
21
81
3
61
46
3
5
44
1.45
28122--28432
168
1.8
170
84
2
430
34
12
17
35
1.88
29350--29382
15
2.2
15
94
0
57
48
12
18
21
1.80
36527--36820
58
5.1
58
97
0
534
40
19
23
17
1.91
42022--42122
38
2.7
38
92
0
166
34
11
20
32
1.89
56256--56287
15
2.1
15
94
0
55
34
28
12
25
1.92
71076--71102
11
2.5
11
100
0
54
37
0
0
62
0.95
73062--73109
23
2.1
24
88
7
73
68
0
29
2
1.01
73114--73149
10
3.5
10
92
3
54
27
2
0
69
1.02
73136--73168
17
1.9
17
93
0
57
30
0
0
69
0.88
73119--73166
10
5.2
10
78
19
50
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79653--79708
28
2.0
28
96
0
103
10
30
7
51
1.63
86357--87248
134
6.7
134
84
2
1064
35
16
22
25
1.95
86353--87327
64
14.8
64
68
12
470
35
16
22
25
1.95
86542--87156
70
9.1
69
67
13
323
35
16
22
25
1.95
88710--88795
45
1.9
45
85
0
118
37
16
9
37
1.81
101442--101478
12
3.1
12
88
0
56
43
0
8
48
1.32
107909--107962
20
2.7
20
80
5
56
27
5
5
61
1.41
108274--108308
17
2.1
17
88
0
52
42
0
17
40
1.49
110870--110907
3
12.3
3
88
5
58
2
31
0
65
1.06
120470--120630
61
2.7
58
83
5
198
32
19
13
33
1.91
120630--120712
43
1.9
43
97
0
157
42
13
16
27
1.86
125530--125572
2
21.5
2
90
0
68
46
2
0
51
1.13
128565--128605
20
2.1
20
86
4
57
41
4
4
48
1.46
137223--137308
28
2.9
30
86
8
122
38
6
8
46
1.61
137223--137323
31
3.4
31
83
8
118
40
7
7
43
1.63
137556--137581
7
3.7
7
100
0
52
11
0
0
88
0.52
137963--138005
15
3.1
14
90
9
63
41
0
0
58
0.98

Tables:   1

The End!