Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007929.1 Corchorus capsularis cultivar CVL-1 contig07950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40279

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
312--374
31
2.1
31
82
8
78
26
17
6
49
1.71
2269--2401
22
6.0
22
83
2
162
33
10
17
38
1.84
2315--2417
44
2.5
40
82
13
136
33
11
16
37
1.85
2461--2600
22
6.4
22
72
11
90
36
7
19
36
1.81
2663--2853
22
8.6
22
71
5
125
42
10
12
34
1.77
2958--3008
19
2.6
20
81
6
68
47
9
15
27
1.77
2996--3072
22
3.5
22
71
15
61
36
6
12
44
1.69
3110--3182
38
1.9
38
82
0
92
43
9
13
32
1.77
3149--3274
45
2.8
45
80
8
123
41
10
11
36
1.76
3171--3274
23
4.6
22
84
3
109
39
9
12
38
1.76
3171--3285
22
5.1
22
84
3
104
38
8
14
38
1.77
3217--3294
22
3.5
23
83
11
83
37
12
12
37
1.82
3602--3628
7
3.9
7
100
0
54
0
11
0
88
0.50
3618--3657
22
1.9
22
90
10
66
2
27
0
70
1.01
5547--5628
30
2.7
31
84
1
103
37
13
23
25
1.91
6059--6107
22
2.2
22
85
7
64
51
2
16
30
1.56
6281--6308
2
14.0
2
100
0
56
50
0
0
50
1.00
13413--13502
3
30.3
3
80
10
105
61
0
0
38
0.96
13413--13502
14
6.3
14
84
13
112
61
0
0
38
0.96
18114--18144
2
15.5
2
93
0
53
45
0
0
54
0.99
18111--18145
10
3.3
10
85
14
52
42
0
0
57
0.99
18533--18621
45
2.0
45
97
0
169
24
22
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19857--19893
2
18.5
2
100
0
74
51
0
0
48
1.00
20799--20829
2
15.5
2
100
0
62
48
0
0
51
1.00
27018--27048
16
1.9
16
93
0
53
35
6
22
35
1.80
28114--28155
22
1.9
22
90
0
66
23
28
28
19
1.98
30549--30609
16
4.0
15
75
16
63
34
1
22
40
1.64
30831--30874
21
2.1
21
91
4
72
22
29
22
25
1.99
38396--38421
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!