Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007933.1 Corchorus capsularis cultivar CVL-1 contig07954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46263

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1623
3
15.3
3
95
4
83
64
0
0
35
0.94
1677--1775
52
1.9
52
100
0
198
47
17
8
27
1.75
9428--9460
2
16.5
2
93
0
57
0
0
45
54
0.99
18726--18846
62
2.0
62
83
6
156
31
24
13
30
1.93
19436--19485
27
1.9
25
88
8
73
62
10
0
28
1.27
22409--22484
29
2.6
29
89
2
107
19
26
13
40
1.88
22642--22699
29
2.0
30
89
3
91
39
12
27
20
1.88
22657--22719
29
2.2
29
85
0
81
44
15
22
17
1.86
32859--32906
17
2.8
17
83
3
60
0
14
6
79
0.92
32859--32906
18
2.7
18
83
6
62
0
14
6
79
0.92
35921--35954
8
4.2
8
92
0
50
61
0
38
0
0.96
41479--41530
21
2.5
21
100
0
104
26
11
19
42
1.85
44456--44482
2
13.5
2
100
0
54
48
0
51
0
1.00
44991--45036
15
3.1
15
100
0
92
19
19
28
32
1.96
45111--45215
31
3.5
29
78
10
88
40
21
16
21
1.91
45728--45809
34
2.3
37
83
8
107
26
4
26
41
1.76
45957--45982
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!