Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007936.1 Corchorus capsularis cultivar CVL-1 contig07957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20030
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:6083 original size:2 final size:2

Alignment explanation


    Indices: 6076--6105  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       6066 ATCCTCACAA

                                                        
       6076 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
          1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT

       6106 ATACCTTGTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50


Consensus pattern (2 bp):   
GT

Found at i:13712 original size:19 final size:18

Alignment explanation


    Indices: 13688--13723  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

      13678 TGAAGATTTC

                               
      13688 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
      13707 TTGAAGATTATTGAAGA
          1 TTGAAGATAATTGAAGA

      13724 ATCATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT
Done.