Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007938.1 Corchorus capsularis cultivar CVL-1 contig07959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 945

Length: 1576
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26


Found at i:653 original size:17 final size:17

Alignment explanation


    Indices: 631--664  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        621 AAGAAAGAAG

                             
        631 AAAAAAAAAAAACTAAA
          1 AAAAAAAAAAAACTAAA

                             
        648 AAAAAAAAAAAACTAAA
          1 AAAAAAAAAAAACTAAA

        665 TGGGCCAATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.88, C:0.06, G:0.00, T:0.06


Consensus pattern (17 bp):   
AAAAAAAAAAAACTAAA
Done.