Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000794.1 Corchorus capsularis cultivar CVL-1 contig00794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9865

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2786--2832
14
3.4
14
70
5
51
59
2
8
29
1.39
2704--3104
151
2.7
150
90
3
653
53
3
9
33
1.51
2657--3104
151
3.0
146
88
7
576
54
3
8
33
1.48
5233--5260
1
28.0
1
100
0
56
0
0
0
100
0.00
5317--5394
40
2.0
40
97
0
147
29
29
12
28
1.93
8033--8125
39
2.2
42
80
12
104
43
19
5
32
1.74
8056--8679
22
28.2
22
67
15
220
37
16
8
37
1.79
8055--8256
87
2.3
86
76
10
212
39
18
7
34
1.79
8439--8486
25
1.9
25
91
0
78
29
27
10
33
1.90
8846--8899
22
2.5
22
87
6
74
37
9
11
42
1.73
9025--9076
22
2.4
22
83
0
68
38
15
11
34
1.83

Tables:   1

The End!