Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007940.1 Corchorus capsularis cultivar CVL-1 contig07961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41163

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
334--390
24
2.4
24
90
0
87
36
29
10
22
1.88
1501--1527
12
2.2
12
100
0
54
22
7
7
62
1.46
2092--2174
29
2.8
30
83
3
96
28
18
12
40
1.86
2092--2188
31
3.2
30
78
12
101
30
17
11
40
1.85
4073--4149
6
12.8
6
68
15
52
75
1
0
23
0.88
4078--4139
16
3.8
16
79
12
72
72
1
0
25
0.94
4073--4152
33
2.5
33
81
15
98
76
1
0
22
0.86
4073--4146
27
2.7
27
83
6
78
74
1
0
24
0.90
6800--6829
3
10.0
3
100
0
60
66
0
0
33
0.92
7825--8085
134
1.9
134
82
6
323
23
30
15
30
1.95
17741--18351
306
2.0
307
97
0
1152
19
12
26
41
1.87
19170--19238
2
36.0
2
77
13
65
50
1
2
44
1.25
22177--22488
156
2.0
156
98
0
597
38
17
15
29
1.90
33629--33664
10
3.6
10
88
0
54
41
22
8
27
1.82

Tables:   1

The End!