genome.fa.s7942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007942.1 Corchorus capsularis cultivar CVL-1 contig07963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51832

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321--686	101	3.7	101	93	1	612	36	16	5	41	1.71
318--688	51	7.4	50	80	3	424	36	16	5	42	1.71
3427--3498	28	2.6	27	89	4	108	33	26	25	15	1.95
6608--6642	5	7.0	5	90	0	52	2	40	0	57	1.14
10131--10267	42	3.4	42	85	4	183	29	12	23	34	1.91
10131--10267	21	6.7	21	78	6	156	29	12	23	34	1.91
10347--10380	17	2.0	17	94	0	59	32	29	14	23	1.94
10342--10413	21	3.6	21	76	14	80	37	18	13	30	1.89
10700--10803	21	5.0	21	81	8	108	35	23	13	27	1.92
10702--10803	41	2.5	42	84	9	122	36	21	13	28	1.92
14086--14132	21	2.2	22	84	3	60	40	17	27	14	1.89
20446--20625	74	2.5	73	85	3	236	45	6	21	27	1.75
20459--20586	36	3.5	36	72	13	118	48	4	19	27	1.69
20631--20800	35	4.8	36	96	2	317	49	11	11	27	1.73
20873--21126	11	23.1	11	91	0	373	55	9	25	9	1.63
21141--21189	24	2.0	24	84	7	64	42	10	20	26	1.84
21168--21425	36	7.2	35	81	3	282	39	9	24	26	1.86
21168--21425	107	2.4	108	90	1	394	39	9	24	26	1.86
21165--21425	143	1.8	143	86	3	382	40	9	23	26	1.85
21168--21444	71	3.9	69	80	8	272	39	10	23	26	1.86
21467--21549	36	2.3	36	89	0	121	40	7	20	31	1.79
29647--29992	65	5.2	65	76	8	320	21	19	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29664--29966	135	2.3	132	81	6	360	21	18	18	41	1.90
29979--30082	48	2.2	46	83	6	129	24	29	16	29	1.96
37852--37881	2	15.0	2	92	0	51	53	0	46	0	1.00
41970--42017	21	2.3	21	75	3	53	6	25	8	60	1.49
42100--42129	16	1.9	15	93	6	51	10	13	13	63	1.52
46798--46847	14	3.5	14	86	8	57	42	8	12	38	1.71
51036--51069	6	5.5	6	93	6	59	55	14	0	29	1.40
51031--51087	13	4.7	12	82	8	53	59	14	5	21	1.54
51031--51074	19	2.5	17	82	10	61	56	15	4	22	1.57
51066--51100	13	2.7	13	95	0	61	65	8	8	17	1.44
51066--51106	13	3.2	12	86	10	55	65	9	7	17	1.44

Tables:   1

The End!