Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000795.1 Corchorus capsularis cultivar CVL-1 contig00795, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32


Found at i:776 original size:51 final size:51

Alignment explanation


    Indices: 700--803  Score: 208
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        690 CCGTTTTAGG

                                                               
        700 TCCAAACGGAGCTTAAGTGTAAACTCCGTTTCAATCTCTGCTCTAATAATT
          1 TCCAAACGGAGCTTAAGTGTAAACTCCGTTTCAATCTCTGCTCTAATAATT

                                                               
        751 TCCAAACGGAGCTTAAGTGTAAACTCCGTTTCAATCTCTGCTCTAATAATT
          1 TCCAAACGGAGCTTAAGTGTAAACTCCGTTTCAATCTCTGCTCTAATAATT

              
        802 TC
          1 TC

        804 ATCTATCTAA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   53  1.00

ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34


Consensus pattern (51 bp):   
TCCAAACGGAGCTTAAGTGTAAACTCCGTTTCAATCTCTGCTCTAATAATT
Done.