Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007950.1 Corchorus capsularis cultivar CVL-1 contig07971, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17220

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
893--943
25
2.0
25
84
0
66
23
25
7
43
1.81
1497--1537
21
1.9
22
90
5
66
48
17
31
2
1.60
8689--8743
21
2.7
21
80
8
60
21
20
18
40
1.92
11750--12032
120
2.4
120
87
1
390
23
25
23
27
2.00
12984--13043
21
2.9
21
100
0
120
20
10
33
36
1.86
13193--13225
17
1.9
17
93
0
57
30
6
33
30
1.82
16015--16073
30
1.9
31
86
3
84
32
18
3
45
1.66
16015--16081
31
2.2
31
83
5
82
32
16
4
46
1.67
16192--16282
38
2.5
36
80
7
112
14
18
12
54
1.70
16416--16555
22
6.3
22
76
9
122
32
9
20
38
1.84
16632--16714
22
3.8
22
80
6
87
33
8
18
39
1.80
16592--16729
22
6.4
22
71
17
67
38
7
16
36
1.78
16752--17006
22
11.6
23
72
12
135
42
10
13
33
1.78
16815--16978
66
2.5
65
77
11
165
42
9
12
34
1.76
17106--17185
22
3.5
23
78
10
76
40
11
10
38
1.75

Tables:   1

The End!