Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007956.1 Corchorus capsularis cultivar CVL-1 contig07977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14414
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:6123 original size:14 final size:14

Alignment explanation


    Indices: 6104--6135  Score: 55
    Period size: 14  Copynumber: 2.3  Consensus size: 14

       6094 TAACAATTAT

                          
       6104 GACTGTAACAAAAA
          1 GACTGTAACAAAAA

                     *    
       6118 GACTGTAACGAAAA
          1 GACTGTAACAAAAA

                
       6132 GACT
          1 GACT

       6136 ATATAAGCTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.50, C:0.16, G:0.19, T:0.16


Consensus pattern (14 bp):   
GACTGTAACAAAAA

Found at i:14351 original size:2 final size:2

Alignment explanation


    Indices: 14344--14377  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      14334 TAGATTTTGG

                                                              
      14344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      14378 GTGTGTGTGT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:14382 original size:2 final size:2

Alignment explanation


    Indices: 14377--14413  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

      14367 TATATATATA

                                                                   
      14377 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T

      14414 A


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51


Consensus pattern (2 bp):   
TG

Done.