Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007959.1 Corchorus capsularis cultivar CVL-1 contig07980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26927

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5011--5069
31
1.9
31
82
6
75
49
18
8
23
1.75
8823--8866
20
2.1
21
95
4
81
18
40
9
31
1.81
9162--9229
26
2.6
26
92
0
109
35
1
11
51
1.48
9239--9297
25
2.5
24
88
5
84
40
1
23
33
1.65
9365--9409
21
2.1
22
87
4
65
31
11
40
17
1.85
10222--10264
13
3.3
13
86
0
59
76
0
2
20
0.89
10229--10264
18
2.0
18
88
0
54
77
0
2
19
0.88
10357--10412
25
2.2
25
84
6
69
51
23
7
17
1.70
12297--12338
19
2.2
19
95
0
75
59
9
2
28
1.41
13253--13278
10
2.6
10
100
0
52
23
7
19
50
1.73
14477--14559
38
2.2
38
97
0
157
21
21
30
26
1.99
17229--17319
32
2.8
32
96
0
164
27
18
13
40
1.88

Tables:   1

The End!