Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007964.1 Corchorus capsularis cultivar CVL-1 contig07985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49624

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4899--5070
87
2.0
87
90
2
274
37
19
23
19
1.94
17702--17760
25
2.4
25
85
0
82
57
6
3
32
1.41
18188--18219
16
2.0
16
100
0
64
43
12
6
37
1.68
22926--22966
1
41.0
1
100
0
82
0
0
0
100
0.00
26290--26317
7
4.0
7
100
0
56
14
42
0
42
1.45
39539--39602
22
2.8
23
85
4
85
75
6
7
10
1.20
39544--39605
24
2.7
22
76
9
61
75
6
8
9
1.18
40315--40339
2
12.5
2
100
0
50
48
0
0
52
1.00
42291--42350
22
2.8
21
78
12
59
33
15
11
40
1.83
42333--42433
22
4.6
22
71
3
53
37
15
11
34
1.85
42553--42608
22
2.6
22
78
16
64
37
8
14
39
1.77
44828--44865
11
3.5
11
85
10
51
57
2
0
39
1.12
45197--45529
166
2.0
166
100
0
666
42
12
19
25
1.87
48692--48761
33
2.1
34
89
7
108
17
21
11
50
1.77
49385--49440
19
2.8
20
67
5
51
12
7
8
71
1.30

Tables:   1

The End!