genome.fa.s7965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007965.1 Corchorus capsularis cultivar CVL-1 contig07986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84393

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652--1847	76	2.6	76	90	0	304	27	29	25	18	1.98
9868--9905	11	3.5	11	85	10	51	57	2	0	39	1.12
10415--10478	29	2.1	29	82	5	74	29	17	3	50	1.61
11992--12141	44	3.4	43	78	12	162	36	12	14	36	1.83
11990--12143	22	7.0	21	74	9	139	35	11	16	36	1.85
11990--12201	22	9.5	22	73	4	111	34	9	16	39	1.82
12231--12344	44	2.6	43	79	6	113	38	8	19	33	1.82
12227--12555	22	14.7	22	68	18	80	40	10	16	33	1.81
12427--12572	66	2.2	65	79	8	161	43	9	13	33	1.77
12430--12575	22	6.6	22	75	9	120	42	10	13	34	1.77
12681--12753	19	3.6	20	87	7	94	41	10	17	30	1.84
12681--13011	22	15.5	22	70	14	115	40	9	15	35	1.79
12719--13142	66	6.5	66	70	13	245	38	9	14	37	1.80
12719--12971	44	5.9	43	74	12	180	41	8	13	36	1.76
12849--12921	38	1.9	38	82	0	92	42	8	13	35	1.74
12888--12967	23	3.5	23	81	8	92	41	7	11	40	1.69
12887--12992	45	2.4	45	79	3	115	40	10	11	37	1.75
13225--13278	22	2.5	22	84	0	63	40	11	11	37	1.76
13399--13423	2	12.5	2	100	0	50	48	0	0	52	1.00
14931--14961	2	16.0	2	93	6	55	51	0	0	48	1.00
17151--17214	20	3.3	19	87	8	85	31	17	32	18	1.94
17388--17426	6	6.5	6	93	0	51	15	25	10	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17388--17426	12	3.2	12	88	0	60	15	25	10	48	1.76
24620--24682	25	2.5	24	87	5	81	52	1	0	46	1.10
24624--24725	24	4.0	26	73	15	81	51	2	0	45	1.16
24623--24725	50	2.0	50	84	9	134	51	2	0	45	1.16
25577--25624	25	1.9	25	95	0	87	35	18	33	12	1.89
26477--26517	21	2.0	20	90	4	64	17	0	34	48	1.47
34386--34495	57	1.9	57	94	0	193	19	22	20	38	1.94
40394--40534	59	2.4	59	95	0	255	48	7	13	29	1.70
40708--40761	2	25.5	2	89	10	81	48	0	5	46	1.25
44079--44243	82	2.0	82	98	0	321	38	27	21	12	1.90
44354--44387	15	2.3	15	90	10	52	61	5	5	26	1.42
44807--44861	13	4.2	13	78	15	60	61	7	1	29	1.33
44807--44861	26	2.1	26	83	6	67	61	7	1	29	1.33
45307--45359	13	3.7	14	79	20	65	30	1	0	67	1.01
45314--45365	22	2.2	24	90	10	81	30	1	0	67	1.02
48936--49219	141	2.0	142	83	7	364	38	13	16	32	1.87
52962--53254	142	2.1	142	88	2	428	34	15	16	33	1.91
53863--53892	2	14.5	2	93	6	51	50	0	3	46	1.18
55320--55361	22	1.9	23	90	9	70	52	19	19	9	1.72
56345--56380	19	1.9	19	94	5	65	30	0	0	69	0.89
58272--58322	24	2.1	24	85	0	66	66	5	5	21	1.35
59583--59762	55	3.3	54	72	17	183	41	19	3	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59636--59814	53	3.3	53	74	11	211	38	18	4	37	1.72
59583--59814	108	2.1	108	97	0	437	40	18	4	36	1.71
62409--62453	18	2.4	18	88	7	63	55	6	0	37	1.26
62884--62928	24	1.9	23	86	4	63	51	6	2	40	1.41
66208--66232	2	12.5	2	100	0	50	52	0	0	48	1.00
74899--75031	63	2.1	63	98	0	257	45	18	17	19	1.86
81882--81923	13	3.5	12	78	12	50	0	21	0	78	0.75
82697--82734	18	2.1	19	90	5	60	47	18	10	23	1.79

Tables:   1

The End!