Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007966.1 Corchorus capsularis cultivar CVL-1 contig07987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34631

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2635--2672
18
2.1
19
90
5
60
47
18
10
23
1.79
3107--3169
32
2.0
32
90
0
99
22
12
12
52
1.73
3302--3363
32
1.9
32
90
0
97
22
11
14
51
1.74
3014--3396
194
2.0
194
95
1
687
22
14
13
49
1.78
4535--4572
19
2.0
19
90
10
60
28
15
10
44
1.80
9308--9477
22
7.7
22
69
6
78
35
12
10
41
1.77
11704--11752
22
2.2
22
85
0
62
40
16
10
32
1.82
11715--12048
22
15.6
21
73
13
177
35
14
9
40
1.79
11761--11840
23
3.5
23
86
1
108
40
12
6
41
1.68
11975--12048
20
3.6
20
85
10
96
29
14
12
43
1.82
12156--12207
22
2.4
22
87
3
79
36
9
7
46
1.66
12154--12233
22
3.6
22
81
0
70
33
13
10
42
1.78
12830--12931
22
4.6
22
76
12
77
37
12
11
38
1.80
12848--12931
21
3.7
24
82
13
90
34
13
11
40
1.81
12971--13088
22
5.4
22
73
16
95
34
17
8
38
1.80
12985--13088
44
2.4
44
79
10
115
35
17
9
37
1.82
13124--13286
22
7.3
21
77
8
137
38
19
9
31
1.85
13119--13287
68
2.5
66
78
10
173
39
18
9
31
1.83
14631--14754
38
3.3
37
89
5
178
57
12
16
13
1.66
15414--15477
33
1.9
33
96
0
119
42
4
12
40
1.64
32289--32345
2
30.5
2
80
19
70
49
1
0
49
1.11
32294--32339
24
1.9
24
95
0
83
47
2
0
50
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33189--33260
33
2.2
33
85
2
92
16
34
30
18
1.93
33769--33806
16
2.4
16
87
12
53
10
13
39
36
1.79

Tables:   1

The End!