Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007967.1 Corchorus capsularis cultivar CVL-1 contig07988, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10584

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--658
39
5.2
38
77
10
183
48
7
16
27
1.72
424--658
38
6.2
38
76
12
191
48
7
17
26
1.72
424--630
78
2.7
76
81
11
240
50
7
16
26
1.71
663--738
33
2.3
33
95
4
136
57
2
23
15
1.51
681--737
17
3.4
17
72
13
64
57
1
24
15
1.48
685--737
16
3.2
16
70
15
54
58
1
24
15
1.47
725--765
22
1.9
22
90
5
66
63
0
17
19
1.31
776--834
15
4.0
15
74
26
63
52
6
23
16
1.68
773--869
16
6.2
16
73
21
73
54
5
22
17
1.62
808--891
35
2.5
32
79
14
89
57
3
22
16
1.55
969--1033
32
2.0
32
85
5
87
44
6
18
30
1.74
1140--1226
14
6.3
13
74
18
61
55
3
20
20
1.58
1347--1376
15
2.0
15
93
0
51
63
0
16
20
1.31
2639--2673
7
4.9
7
89
6
52
80
0
2
17
0.84
3351--3387
14
2.6
14
91
4
56
2
16
0
81
0.81
7777--7811
11
3.2
11
83
0
52
77
17
5
0
0.96
10362--10404
21
2.0
21
95
0
77
20
41
6
30
1.79
10364--10410
21
2.2
21
88
3
67
23
40
10
25
1.87

Tables:   1

The End!