Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007971.1 Corchorus capsularis cultivar CVL-1 contig07992, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38911

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9500--9580
29
2.8
28
82
14
101
32
16
12
39
1.85
9433--9574
40
4.0
38
71
20
105
34
16
12
36
1.86
9500--9580
30
2.7
30
85
10
114
32
16
12
39
1.85
10160--10190
1
31.0
1
100
0
62
100
0
0
0
0.00
12247--12930
228
3.0
228
87
0
1037
17
26
28
27
1.97
16860--16952
46
2.0
46
97
0
177
49
13
12
23
1.77
17452--18114
228
2.9
228
84
0
815
18
25
26
29
1.98
19725--19768
20
2.1
21
83
8
54
59
11
2
27
1.44
19940--19976
2
18.0
2
94
5
65
48
0
2
48
1.15
29512--29544
1
33.0
1
93
0
57
0
0
3
96
0.20
30541--30623
44
1.9
43
85
2
112
51
4
10
32
1.58
31074--31182
41
2.7
41
94
0
182
41
21
9
28
1.83
36925--36991
33
2.0
33
97
0
125
38
14
19
26
1.91

Tables:   1

The End!