Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007972.1 Corchorus capsularis cultivar CVL-1 contig07993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25622

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
742--769
13
2.2
13
100
0
56
10
21
0
67
1.20
1731--1838
31
3.5
31
80
7
87
34
13
18
33
1.90
1992--2049
29
2.0
29
86
3
80
29
18
15
36
1.92
3930--3997
29
2.3
29
84
2
82
42
26
10
20
1.84
5893--5944
14
3.4
15
75
21
54
30
9
1
57
1.42
6297--6446
69
2.2
70
90
2
239
47
10
10
32
1.71
6659--6716
30
1.9
30
100
0
116
34
18
6
39
1.78
8168--8203
13
2.8
13
100
0
72
33
13
25
27
1.94
21799--21900
51
2.0
49
90
3
159
37
9
14
38
1.80
22009--22122
62
1.9
57
84
11
151
39
22
8
28
1.84
24829--24892
2
32.5
2
85
14
89
50
3
0
46
1.17
24829--24892
31
2.2
30
88
8
96
50
3
0
46
1.17

Tables:   1

The End!