Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007974.1 Corchorus capsularis cultivar CVL-1 contig07995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54201

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
350--416
27
2.5
28
82
7
84
49
0
5
44
1.27
339--517
94
1.9
95
87
3
263
54
3
6
34
1.45
339--519
96
1.9
95
86
4
258
54
3
6
34
1.45
744--839
38
2.6
37
81
6
104
55
10
18
15
1.68
744--839
37
2.6
38
81
6
106
55
10
18
15
1.68
950--1013
31
2.1
31
91
5
105
46
4
20
28
1.70
1115--1209
22
4.4
21
78
13
70
41
11
11
35
1.78
2574--3590
332
3.1
325
74
9
811
32
13
15
37
1.87
4538--4611
29
2.5
29
80
4
76
39
17
13
29
1.88
5318--5347
14
2.1
15
93
6
53
6
0
30
63
1.20
11044--11098
28
2.0
28
89
7
85
34
29
23
12
1.92
22886--22946
30
2.0
30
96
0
113
27
16
21
34
1.95
25931--25968
19
2.1
17
90
9
58
0
0
10
89
0.49
25931--25967
14
2.6
14
86
0
56
0
0
10
89
0.49
25936--25966
7
4.6
7
96
4
55
0
0
9
90
0.46
38846--38871
13
2.0
13
100
0
52
23
30
7
38
1.83
39556--39879
166
1.9
167
91
4
539
34
12
9
43
1.75
42309--42377
33
2.1
33
94
0
120
27
8
18
44
1.79
51519--51779
107
2.5
105
90
3
391
40
8
8
42
1.65
53444--53520
2
38.0
2
80
14
79
49
5
1
44
1.33

Tables:   1

The End!