Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007978.1 Corchorus capsularis cultivar CVL-1 contig07999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7993

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
558--956
37
10.8
37
79
5
430
22
16
16
45
1.85
551--958
74
5.5
74
90
2
615
21
16
16
45
1.85
636--756
13
9.8
13
64
16
51
22
14
14
49
1.78
1000--1058
28
2.1
28
83
0
73
37
22
6
33
1.80
1028--1123
42
2.3
42
82
8
106
38
20
5
35
1.75
1069--1191
62
2.0
59
86
7
167
39
19
7
33
1.79
1131--1604
34
13.2
35
73
10
194
39
20
7
32
1.80
1207--1264
28
2.1
27
87
3
80
37
22
8
31
1.84
1235--1343
43
2.6
41
85
10
141
36
20
7
35
1.80
1132--1535
147
2.8
146
90
4
617
39
19
7
33
1.79
4535--4578
15
2.9
14
90
10
61
65
2
31
0
1.05

Tables:   1

The End!