Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007981.1 Corchorus capsularis cultivar CVL-1 contig08002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13140

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
834--925
6
13.3
6
70
26
51
45
5
20
28
1.73
864--924
22
2.8
22
90
5
88
45
4
22
26
1.72
828--860
14
2.4
14
94
0
57
45
3
21
30
1.67
1016--1049
14
2.4
14
90
0
50
41
0
26
32
1.56
1059--1117
29
2.0
29
86
0
82
47
5
20
27
1.71
1028--1146
51
2.3
52
83
4
141
42
5
25
27
1.76
1123--1171
24
2.0
24
88
0
71
40
4
24
30
1.74
1229--1407
22
8.2
22
75
11
118
44
6
20
29
1.75
1230--1437
44
4.8
43
79
8
183
44
5
20
29
1.74
1302--1377
14
5.1
15
76
17
70
48
2
17
31
1.60
1533--1622
8
11.2
8
73
9
53
46
4
24
24
1.71
1524--1621
24
4.0
24
73
7
81
44
5
24
25
1.74
1587--1639
24
2.2
24
86
0
70
43
1
28
26
1.65
2606--2647
8
5.2
8
77
11
50
11
11
0
76
1.03
2979--3015
5
6.7
6
93
6
53
16
0
16
67
1.23
3325--3358
15
2.2
15
89
5
50
23
0
0
76
0.79
3372--3436
33
2.0
33
87
0
94
36
13
9
40
1.77
3459--3483
10
2.5
10
100
0
50
20
16
0
64
1.30
6420--6480
28
2.2
27
83
13
72
22
4
13
59
1.53

Tables:   1

The End!