genome.fa.s7982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007982.1 Corchorus capsularis cultivar CVL-1 contig08003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9995

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505--551	23	2.0	24	83	8	60	57	19	2	21	1.51
890--926	17	2.1	18	95	5	67	83	0	8	8	0.80
891--924	11	3.1	11	82	0	50	88	0	8	2	0.62
4347--4398	14	3.6	15	77	17	56	42	7	15	34	1.75
4998--5170	94	1.8	95	90	3	278	36	10	19	32	1.86
5169--5197	14	2.0	15	93	6	51	72	0	20	6	1.07
6218--6354	38	3.6	38	82	2	152	33	19	16	30	1.94
6334--6378	22	2.0	24	82	8	58	33	15	8	42	1.78
6258--6435	98	1.8	98	90	0	284	32	18	16	32	1.94
6356--6447	38	2.4	38	83	0	112	29	19	18	32	1.96
6483--6700	8	26.4	8	63	19	65	33	21	5	39	1.76
6482--6703	17	12.8	18	71	23	133	33	21	5	39	1.78
6481--6697	34	6.3	34	75	16	164	32	21	5	40	1.76
6517--6703	51	3.6	50	83	12	218	32	21	5	39	1.78
6722--6973	47	5.3	47	89	1	369	19	28	16	35	1.94
6722--6973	95	2.7	94	91	1	387	19	28	16	35	1.94
6948--7054	47	2.3	47	80	3	117	23	22	19	34	1.96
6699--7030	142	2.3	141	81	5	364	21	27	16	34	1.95
7193--7377	102	1.8	102	86	0	271	25	24	14	35	1.93
7343--7457	35	3.3	33	69	19	90	31	25	12	31	1.92
7416--7578	61	2.7	61	89	0	245	28	23	13	34	1.92
7481--7578	28	3.3	28	69	22	83	28	24	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7591--7711	61	2.0	62	80	8	140	21	23	19	35	1.96
8542--8583	21	2.0	21	90	0	66	40	26	11	21	1.88

Tables:   1

The End!