Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007986.1 Corchorus capsularis cultivar CVL-1 contig08007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42046

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14577--14629
10
5.0
10
73
13
52
5
22
45
26
1.74
15361--15569
42
5.0
42
68
18
119
20
20
9
50
1.74
15351--15629
126
2.2
124
97
1
461
19
20
8
50
1.74
15589--15660
22
3.2
22
78
9
74
20
18
5
55
1.62
15679--15818
21
6.7
21
68
14
85
20
21
7
50
1.72
16008--16131
34
3.6
34
73
12
117
28
16
6
48
1.71
16008--16147
71
2.0
71
85
2
192
27
18
6
47
1.73
16101--16562
55
8.4
55
93
0
674
24
19
7
47
1.75
17235--17581
51
6.8
50
77
3
354
36
14
4
43
1.67
17242--17581
102
3.3
102
93
0
565
37
14
5
43
1.68
17555--17609
20
2.8
20
91
0
83
34
16
10
38
1.84
19657--19742
23
3.3
26
68
16
79
50
5
16
27
1.68
19624--19738
52
2.2
53
93
1
196
44
5
18
32
1.72
20194--20263
28
2.5
28
88
2
97
44
20
18
17
1.87
20223--20274
27
1.9
27
88
0
77
38
21
23
17
1.93
23390--23982
312
1.9
314
96
0
1109
21
16
16
45
1.85
33580--33636
12
4.9
12
74
8
64
47
15
17
19
1.83
33572--33644
34
2.2
34
92
2
121
45
16
19
19
1.86
37349--37383
14
2.5
14
85
0
52
34
0
51
14
1.42
39078--39152
27
2.8
27
83
0
96
46
25
12
16
1.81
40599--40637
20
2.0
20
85
5
53
28
23
5
43
1.75

Tables:   1

The End!