genome.fa.s7987.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007987.1 Corchorus capsularis cultivar CVL-1 contig08008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70023

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204--3242	12	3.2	12	85	0	51	30	25	30	12	1.93
11424--11487	33	1.9	33	90	0	101	23	9	21	45	1.81
11436--11521	33	2.6	32	83	7	93	29	10	19	40	1.85
11517--11593	33	2.3	33	88	0	109	29	10	15	44	1.80
15102--15128	10	2.7	10	100	0	54	25	51	22	0	1.48
18595--18627	18	1.9	17	88	11	50	33	0	24	42	1.55
33224--33353	33	3.9	34	79	7	106	42	20	10	27	1.83
34745--34779	10	3.7	9	88	11	52	17	0	0	82	0.66
36422--36487	30	2.2	30	86	5	89	9	30	36	24	1.86
38783--38807	8	3.1	8	100	0	50	52	0	36	12	1.39
39785--39817	17	1.9	17	100	0	66	30	36	6	27	1.81
42963--42998	19	1.9	18	88	5	54	41	2	22	33	1.68
45395--45428	10	3.3	10	95	4	59	17	0	0	82	0.67
48642--48690	24	2.0	24	84	0	62	34	28	24	12	1.91
48723--48839	27	4.3	27	92	4	200	19	42	18	18	1.89
50846--50872	6	4.5	6	100	0	54	0	14	66	18	1.25
51242--51332	32	2.8	32	88	3	139	37	25	21	15	1.93
51387--51461	24	3.1	24	80	0	87	22	24	34	18	1.96
51425--51471	24	2.0	24	82	0	58	23	29	31	14	1.95
56080--56120	9	4.3	10	87	9	59	73	7	2	17	1.17
56082--56118	19	2.0	18	89	5	56	75	8	2	13	1.13
57475--57539	30	2.2	30	83	5	78	24	36	27	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59381--59419	15	2.6	15	91	0	60	12	76	0	10	1.01
67772--67807	19	1.9	18	88	5	54	33	22	2	41	1.68
69944--70023	33	2.4	33	91	2	133	33	10	15	41	1.80

Tables:   1

The End!