Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007990.1 Corchorus capsularis cultivar CVL-1 contig08011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7091
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:5343 original size:27 final size:27

Alignment explanation


    Indices: 5313--5380  Score: 77
    Period size: 27  Copynumber: 2.5  Consensus size: 27

       5303 GTCAGACTCT

                 *                       
       5313 CATTCCAAGTTAGTCA-ACACAA-TTCTC
          1 CATTCAAAGTTAGTCACA-ACAATTTC-C

                     *           *     
       5340 CATTCAAAGCTAGTCACAACAGTTTCC
          1 CATTCAAAGTTAGTCACAACAATTTCC

                          
       5367 CATTCAAAGTTAGT
          1 CATTCAAAGTTAGT

       5381 TCCCTAGGAT


Statistics
Matches: 35,  Mismatches: 4, Indels: 4
        0.81            0.09        0.09

Matches are distributed among these distances:
  27   31  0.89
  28    4  0.11

ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29


Consensus pattern (27 bp):   
CATTCAAAGTTAGTCACAACAATTTCC
Done.