Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007991.1 Corchorus capsularis cultivar CVL-1 contig08012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3371
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31


Found at i:528 original size:8 final size:8

Alignment explanation


    Indices: 515--548  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        505 ACCCTTCTTG

                    
        515 AAAAATTC
          1 AAAAATTC

                    
        523 AAAAATTC
          1 AAAAATTC

                 *   
        531 AGAAACTTC
          1 A-AAAATTC

                    
        540 AAAAATTC
          1 AAAAATTC

             
        548 A
          1 A

        549 TAGCCGATTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC

Found at i:637 original size:5 final size:5

Alignment explanation


    Indices: 627--658  Score: 64
    Period size: 5  Copynumber: 6.4  Consensus size: 5

        617 ATCGAAAAAT

                                                  
        627 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
          1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT

        659 TCGACCAGAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   27  1.00

ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22


Consensus pattern (5 bp):   
ATAAA

Done.