Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007996.1 Corchorus capsularis cultivar CVL-1 contig08017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23323

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3340--7485
927
4.5
928
93
1
6999
28
15
21
34
1.94
7983--8064
33
2.4
34
75
20
82
24
36
28
10
1.89
10482--10566
40
2.1
40
82
4
100
48
11
12
27
1.76
10686--10749
11
5.8
11
81
0
74
48
10
15
25
1.77
10688--10759
22
3.3
22
78
7
92
50
11
16
22
1.77
10752--11547
36
22.7
35
85
6
922
42
10
22
24
1.85
10751--11547
177
4.6
177
87
5
1084
42
10
22
24
1.84
10751--11547
213
3.8
212
85
6
1007
42
10
22
24
1.84
10751--11547
106
7.6
100
84
6
687
42
10
22
24
1.84
11551--11657
32
3.2
32
75
17
117
48
6
16
28
1.71
11561--11673
37
3.2
37
75
17
132
48
7
18
25
1.73
12706--12771
18
3.7
18
81
0
69
25
12
25
36
1.91
12701--12771
36
2.0
36
83
5
90
26
12
26
33
1.92
12745--12806
30
2.1
30
84
0
79
25
11
30
32
1.91
12898--12931
15
2.3
15
89
0
50
29
17
41
11
1.85
20203--20960
410
1.8
410
89
1
1198
31
17
23
27
1.97

Tables:   1

The End!