Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007997.1 Corchorus capsularis cultivar CVL-1 contig08018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10314
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34


Found at i:6329 original size:18 final size:18

Alignment explanation


    Indices: 6306--6342  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       6296 GGTGTAGTAT

                              
       6306 TGTACCTGAACCATGTGG
          1 TGTACCTGAACCATGTGG

                              
       6324 TGTACCTGAACCATGTGG
          1 TGTACCTGAACCATGTGG

             
       6342 T
          1 T

       6343 CTTAGGGTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30


Consensus pattern (18 bp):   
TGTACCTGAACCATGTGG
Done.