Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000800.1 Corchorus capsularis cultivar CVL-1 contig00800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3144
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:150 original size:2 final size:2

Alignment explanation


    Indices: 143--196  Score: 65
    Period size: 2  Copynumber: 27.5  Consensus size: 2

        133 TGATTGGTGA

                                                       *  *  *            
        143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AA AC AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

               *               
        185 AT TT A- AT AT AT A
          1 AT AT AT AT AT AT A

        197 CATGAATTAT


Statistics
Matches: 45,  Mismatches: 6, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   44  0.98

ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44


Consensus pattern (2 bp):   
AT

Done.