Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008000.1 Corchorus capsularis cultivar CVL-1 contig08021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98710

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
904--948
13
3.5
13
90
3
74
22
13
8
55
1.65
896--948
25
2.1
25
93
6
90
22
11
7
58
1.57
945--983
6
6.5
6
100
0
78
30
0
15
53
1.42
4030--4092
17
3.6
17
79
12
65
25
34
15
23
1.95
5355--5384
2
15.0
2
100
0
60
50
0
0
50
1.00
5690--6738
22
48.4
21
67
14
306
35
16
9
38
1.82
6457--6520
25
2.8
23
83
11
87
32
14
9
43
1.77
6457--6549
46
2.0
46
84
16
120
31
16
9
43
1.80
6829--6949
21
5.6
21
78
15
122
33
18
13
35
1.89
6776--6971
88
2.2
88
81
9
231
35
18
10
35
1.85
6777--6993
22
9.9
21
75
9
132
35
18
11
35
1.86
6846--6997
66
2.3
65
81
6
175
34
19
12
34
1.89
16237--16308
28
2.6
28
88
0
99
20
25
20
33
1.97
17013--17045
6
5.5
6
100
0
66
54
15
0
30
1.41
17042--17086
13
3.6
12
85
8
63
53
11
13
22
1.71
18645--18965
156
2.1
154
82
4
394
36
20
13
29
1.91
20089--20124
19
1.9
20
88
11
58
69
0
0
30
0.89
21554--21623
26
2.6
27
97
2
133
51
12
12
22
1.74
26205--26240
10
3.6
10
92
0
63
27
8
25
38
1.84
29589--29615
2
13.5
2
100
0
54
51
0
0
48
1.00
34884--34924
17
2.4
17
87
4
64
78
2
0
19
0.87
38691--38722
8
4.0
8
100
0
64
25
37
12
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46675--46774
51
2.0
51
95
0
182
32
12
9
47
1.72
49716--49741
2
13.0
2
100
0
52
0
50
0
50
1.00
51675--51731
28
2.0
28
100
0
114
21
14
10
54
1.69
53892--53999
55
2.0
55
94
0
189
25
17
25
31
1.97
63958--63991
2
17.0
2
93
0
59
50
0
2
47
1.16
66737--66763
2
13.5
2
100
0
54
48
0
0
51
1.00
69230--70180
440
2.2
438
89
2
1476
27
13
16
42
1.85
70633--70661
2
14.5
2
100
0
58
48
0
0
51
1.00
71201--71715
259
2.0
255
90
1
796
32
11
16
39
1.84
73042--73066
4
6.2
4
100
0
50
24
0
0
76
0.80
79664--79705
16
2.6
16
84
0
57
40
40
9
9
1.70
79881--79952
31
2.3
31
75
13
76
26
5
9
58
1.52
80497--80567
31
2.2
32
85
2
90
43
36
12
7
1.70
80499--80584
16
5.5
16
71
16
65
43
38
11
6
1.68
80485--80584
31
3.4
31
78
10
86
42
39
12
7
1.69
87828--87873
21
2.2
21
85
11
60
47
6
0
45
1.28
91307--91363
25
2.4
24
77
8
62
42
1
5
50
1.35

Tables:   1

The End!