Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008007.1 Corchorus capsularis cultivar CVL-1 contig08028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50108

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
518--553
3
12.0
3
100
0
72
0
33
0
66
0.92
551--584
2
17.0
2
100
0
68
0
50
0
50
1.00
1021--1057
18
2.0
19
89
5
58
0
13
5
81
0.86
10757--10812
28
2.0
28
89
3
87
44
16
17
21
1.86
17862--17904
21
2.0
21
95
0
77
39
4
13
41
1.66
20059--20085
2
13.5
2
100
0
54
0
48
0
51
1.00
26393--26494
51
2.0
51
96
0
186
36
4
19
39
1.73
28392--28416
2
12.5
2
100
0
50
48
0
0
52
1.00
39925--40008
30
2.8
30
90
1
134
38
27
4
29
1.77
44337--44415
29
2.7
29
84
4
104
16
24
17
41
1.89
44582--44639
29
2.0
30
89
3
91
37
12
29
20
1.89
45811--45841
15
2.1
15
93
0
53
16
19
32
32
1.94
45826--45903
31
2.5
31
95
0
138
20
21
33
24
1.97
45888--45918
15
2.1
15
100
0
62
12
19
35
32
1.90
45903--46012
24
4.7
24
88
7
172
15
20
37
27
1.92
45903--46052
47
3.4
47
85
9
217
16
20
36
27
1.94
45990--46027
15
2.4
16
86
13
60
13
21
36
28
1.91
45973--46051
39
2.0
39
95
0
140
17
20
34
27
1.95
45997--46027
15
2.1
15
100
0
62
12
19
35
32
1.90

Tables:   1

The End!