Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008008.1 Corchorus capsularis cultivar CVL-1 contig08029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7582
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32


Found at i:1559 original size:14 final size:14

Alignment explanation


    Indices: 1523--1565  Score: 52
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       1513 ATATTATAAG

                           
       1523 TGCTTTTAAGAAAAT
          1 TGCTTTTAAG-AAAT

               **         
       1538 T-CACTTAAGAAAT
          1 TGCTTTTAAGAAAT

                          
       1551 TGCTTTTAAGAAAT
          1 TGCTTTTAAGAAAT

             
       1565 T
          1 T

       1566 TCGGTTATGA


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  13    5  0.22
  14   17  0.74
  15    1  0.04

ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40


Consensus pattern (14 bp):   
TGCTTTTAAGAAAT
Done.