genome.fa.s8009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008009.1 Corchorus capsularis cultivar CVL-1 contig08030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55751

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729--753	13	1.9	13	100	0	50	44	0	0	56	0.99
1290--1337	20	2.3	22	75	7	55	43	2	6	47	1.40
5612--5648	19	2.0	18	89	5	56	18	13	10	56	1.66
5857--5881	13	1.9	13	100	0	50	32	40	4	24	1.73
6573--6610	20	1.9	20	94	0	67	23	28	28	18	1.98
6573--6615	18	2.2	20	88	8	63	23	32	27	16	1.96
10484--10513	4	7.8	4	92	7	53	76	0	23	0	0.78
11510--11716	106	2.0	105	99	0	405	36	20	10	32	1.87
19451--19487	19	2.0	19	89	5	58	64	0	0	35	0.94
23714--23774	9	6.8	9	79	7	70	29	59	11	0	1.33
23712--23774	18	3.5	18	88	0	99	28	60	11	0	1.31
23706--23774	36	1.9	36	90	0	111	28	60	10	0	1.29
25014--25096	22	3.8	22	70	10	71	42	13	8	36	1.74
25015--25099	44	1.9	44	85	4	118	42	15	8	34	1.77
25263--25300	19	2.0	20	85	15	53	63	2	5	28	1.30
25937--26000	30	2.1	31	88	2	94	50	3	15	31	1.60
36526--36550	13	1.9	13	100	0	50	48	4	16	32	1.64
37634--37670	12	3.1	12	92	0	65	37	8	13	40	1.74
39247--39277	2	15.5	2	100	0	62	51	0	0	48	1.00
41210--41284	26	2.9	26	84	4	89	22	20	21	36	1.96
42292--42344	26	2.0	26	100	0	106	58	11	11	18	1.62
43643--43680	3	13.0	3	84	15	53	65	0	31	2	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45142--45177	15	2.4	15	85	0	54	72	2	19	5	1.17
47930--47958	9	3.0	10	90	10	51	31	0	0	68	0.89
47930--47969	19	2.2	18	86	4	53	27	5	0	67	1.11
49196--49254	28	2.1	28	87	0	82	28	10	23	37	1.88
49266--49374	43	2.6	43	85	4	132	34	7	19	38	1.79
49169--49442	148	1.8	149	96	0	505	32	7	18	41	1.78
49423--49459	7	5.3	7	93	0	65	32	2	13	51	1.55
49587--50060	37	12.8	37	77	7	489	44	15	16	23	1.85
49587--50060	146	3.2	148	91	1	754	44	15	16	23	1.85
50036--50082	24	1.9	25	86	4	69	40	14	19	25	1.90
49587--50060	74	6.4	74	92	1	745	44	15	16	23	1.85
50833--51000	87	1.9	87	88	0	255	26	25	10	38	1.87
51824--51861	14	2.6	14	91	4	58	28	7	13	50	1.69
51930--51964	18	1.9	18	88	0	52	2	11	2	82	0.88
55548--55576	9	3.0	10	90	10	51	31	0	0	68	0.89
55548--55587	19	2.2	18	86	4	53	27	5	0	67	1.11
55552--55717	86	1.9	86	84	8	223	33	14	4	47	1.65

Tables:   1

The End!