genome.fa.s8012.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008012.1 Corchorus capsularis cultivar CVL-1 contig08033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132873

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194--1450	58	4.4	58	81	3	234	31	32	19	16	1.95
1481--1551	28	2.5	29	86	2	99	42	32	12	12	1.81
1505--1612	30	3.7	29	83	3	126	47	26	10	15	1.78
2067--2160	28	3.4	28	80	5	93	30	24	25	19	1.98
2089--2220	28	4.7	28	72	7	97	31	27	25	15	1.95
2325--2802	29	16.6	29	82	2	516	28	24	24	22	2.00
2963--3071	28	3.9	28	75	0	110	30	25	26	17	1.97
3889--3938	22	2.3	22	96	0	91	20	42	20	18	1.90
4599--4631	2	16.5	2	100	0	66	48	0	0	51	1.00
5806--6036	123	1.9	122	94	0	326	37	8	16	37	1.79
8342--8480	46	3.0	46	97	0	260	26	22	23	28	1.99
9152--9215	32	2.0	32	90	0	101	17	7	21	53	1.69
10324--10367	18	2.4	18	80	0	52	63	2	13	20	1.40
10805--10842	20	1.9	20	88	0	58	21	0	10	68	1.19
14320--14357	20	1.9	20	89	10	60	28	23	5	42	1.76
14658--14714	29	2.0	29	89	6	89	19	21	15	43	1.87
14638--14721	30	2.8	29	78	12	98	20	21	15	42	1.88
21084--21199	39	3.0	39	92	2	180	18	28	7	44	1.78
25719--25790	31	2.4	30	86	4	92	34	19	9	36	1.85
25742--25798	29	2.0	28	83	6	71	33	19	8	38	1.82
26935--27008	29	2.5	31	82	4	80	29	14	12	43	1.82
28002--28079	40	2.0	40	97	0	147	34	15	16	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39996--40025	16	1.9	16	93	6	53	60	3	6	30	1.39
41444--41478	3	11.7	3	93	0	61	37	31	31	0	1.58
52806--52830	7	3.6	7	100	0	50	0	24	0	76	0.80
66043--66118	36	2.1	37	97	2	145	25	25	21	28	1.99
66117--66258	70	2.0	71	95	1	259	27	15	14	42	1.85
66444--66552	57	1.9	57	90	3	175	26	21	15	36	1.93
86089--86172	41	2.0	41	100	0	168	28	17	19	34	1.95
86182--86235	27	2.0	27	100	0	108	25	18	22	33	1.97
86185--86241	27	2.3	24	88	11	80	24	21	22	31	1.98
98053--98087	18	1.9	18	88	0	52	5	11	48	34	1.63
98548--98622	21	3.6	21	90	0	114	5	5	49	40	1.48
111383--111501	34	3.5	34	98	0	229	37	10	21	30	1.87
122185--122210	2	13.0	2	100	0	52	50	0	0	50	1.00
123199--123228	5	5.8	5	96	4	51	80	0	16	3	0.85
130502--130527	5	5.2	5	100	0	52	42	38	19	0	1.51

Tables:   1

The End!