Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008016.1 Corchorus capsularis cultivar CVL-1 contig08037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56561

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7083--7137
22
2.5
21
73
23
51
56
7
20
16
1.63
8611--8881
89
3.0
89
80
7
298
51
20
12
16
1.76
9265--9304
5
8.2
5
84
15
57
60
0
2
37
1.11
11361--11422
30
2.1
30
100
0
124
43
6
6
43
1.55
14922--14955
17
2.0
17
88
11
52
26
29
23
20
1.99
15334--15780
30
14.6
30
86
3
529
32
16
17
32
1.93
24572--24655
32
2.6
32
90
3
116
40
23
14
21
1.90
24583--24655
32
2.2
33
95
2
130
38
21
16
23
1.93
29089--29148
30
2.0
30
93
0
102
18
25
21
35
1.96
41069--41197
55
2.3
55
85
7
165
48
6
20
24
1.74
41452--41872
16
26.4
16
68
18
195
55
5
22
16
1.62
41287--41901
223
2.7
223
90
3
934
55
6
21
16
1.63
41287--41903
111
5.5
111
92
2
925
55
6
21
16
1.63
41690--41872
31
5.8
31
71
16
151
54
5
23
16
1.62
41843--41893
22
2.3
22
93
0
84
60
3
19
15
1.50
41995--42031
15
2.5
15
100
0
74
56
5
18
18
1.60
44271--44319
21
2.3
21
85
0
62
28
28
32
10
1.90
46589--46620
11
2.9
11
90
0
55
37
0
18
43
1.51
46599--46636
19
2.1
18
90
5
58
44
2
21
31
1.66
47982--48012
6
5.3
6
96
3
55
35
0
12
51
1.40
48347--48383
17
2.1
18
90
5
58
51
10
13
24
1.73

Tables:   1

The End!