genome.fa.s8018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008018.1 Corchorus capsularis cultivar CVL-1 contig08039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50463

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98--164	32	2.1	32	86	8	93	34	13	11	40	1.81
1129--1228	26	3.6	26	71	21	85	40	26	14	20	1.90
1128--1371	59	4.3	57	82	8	293	38	27	13	19	1.90
1270--1371	30	3.4	30	81	10	127	39	29	12	18	1.88
1165--1371	112	1.8	111	85	10	287	39	28	13	19	1.89
8222--8260	12	3.6	12	80	19	50	25	28	15	30	1.96
9340--9369	3	10.3	3	92	7	53	30	0	36	33	1.58
10450--10501	12	4.2	12	90	4	77	26	19	15	38	1.91
10450--10501	25	2.1	24	89	3	77	26	19	15	38	1.91
17936--18035	26	3.6	26	71	21	85	40	26	14	20	1.90
17935--18178	59	4.3	57	82	8	293	39	27	13	19	1.89
18077--18178	30	3.4	30	81	10	127	39	29	12	18	1.88
17972--18178	112	1.8	111	85	10	287	40	27	13	19	1.88
20531--20588	2	30.5	2	79	10	68	44	0	0	55	0.99
20531--20591	15	4.2	14	87	12	88	44	0	0	55	0.99
22689--22726	11	3.1	12	88	11	51	55	28	0	15	1.41
23026--23141	56	2.1	53	82	7	135	24	33	15	26	1.95
24244--24297	24	2.2	24	87	6	74	48	11	7	33	1.67
24685--24713	6	4.8	6	100	0	58	86	0	0	13	0.58
31107--31146	21	1.9	21	85	10	55	25	25	32	17	1.97
38626--38889	138	1.9	141	86	3	383	42	16	10	29	1.82
44002--44053	21	2.5	21	77	0	59	32	9	25	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44736--44762	8	3.4	8	100	0	54	25	37	0	37	1.57

Tables:   1

The End!