Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008019.1 Corchorus capsularis cultivar CVL-1 contig08040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28128

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
680--721
6
7.3
6
78
10
52
0
4
16
78
0.91
680--721
11
3.7
11
83
3
57
0
4
16
78
0.91
1287--1370
44
1.9
44
80
4
98
36
8
17
36
1.80
1527--1613
22
4.0
22
83
3
104
39
9
20
31
1.84
1515--1613
44
2.3
43
82
5
119
37
11
19
32
1.87
1672--1904
22
10.6
22
69
10
104
36
10
14
38
1.80
1773--1876
46
2.3
44
81
6
111
35
13
13
37
1.84
1871--1947
22
3.5
21
76
13
75
38
5
12
42
1.66
1972--2026
22
2.7
20
81
10
65
40
5
7
47
1.54
2230--2260
6
5.3
6
96
3
55
51
0
12
35
1.40
4051--4078
2
14.0
2
100
0
56
50
0
0
50
1.00
10157--10197
2
20.5
2
94
0
73
51
0
46
2
1.14
10630--10673
21
2.1
21
91
0
70
13
40
9
36
1.76
10880--10926
22
2.1
23
88
4
69
57
8
2
31
1.41
10891--10940
22
2.3
22
82
6
57
60
6
2
32
1.32
10904--10942
15
2.6
15
83
0
51
56
5
2
35
1.35
13302--13452
75
2.0
75
98
0
293
28
16
15
39
1.89
13506--13573
31
2.2
31
94
0
118
26
25
14
33
1.94
15590--15631
22
1.9
22
85
0
57
16
30
30
21
1.95
16723--16760
17
2.2
17
100
0
76
23
42
18
15
1.89
24404--24463
31
1.9
31
93
0
102
31
15
3
50
1.60
25709--25998
151
1.9
149
86
8
408
37
10
7
44
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26567--26708
22
6.3
22
71
8
88
35
7
18
39
1.78
26744--26889
22
6.6
21
74
12
98
36
7
18
37
1.79
26744--27723
44
22.5
44
66
17
250
38
9
15
36
1.80
26763--26889
66
1.9
66
82
9
161
35
6
19
38
1.77
26889--27138
22
11.5
22
72
14
146
42
10
14
33
1.78
26988--27140
66
2.3
66
82
4
175
40
9
15
34
1.80
27238--27508
22
12.5
22
73
12
161
39
9
13
37
1.78
27219--27508
66
4.5
64
74
12
204
39
9
14
36
1.79
27539--27587
22
2.2
23
78
10
57
34
14
14
36
1.86
27548--27594
22
2.1
22
88
0
67
31
12
19
36
1.89
27613--27719
22
4.9
22
70
6
74
46
7
12
33
1.69

Tables:   1

The End!