Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008022.1 Corchorus capsularis cultivar CVL-1 contig08043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79080

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8313--8429
16
7.4
16
89
0
164
7
21
37
33
1.82
8872--8919
21
2.3
21
88
0
78
56
6
8
29
1.53
9042--9138
9
12.0
8
69
24
62
9
21
37
31
1.85
9023--9137
16
7.2
16
77
14
112
8
20
36
33
1.84
9033--9136
32
3.2
32
89
5
149
8
20
37
33
1.83
9037--9130
48
2.0
48
87
4
136
8
20
38
32
1.83
9043--9160
48
2.5
48
81
10
118
8
22
38
31
1.84
9589--9653
22
3.0
22
77
11
62
47
9
4
38
1.56
9965--10084
54
2.2
54
91
1
197
44
9
5
41
1.58
12827--12861
15
2.3
15
100
0
70
34
11
34
20
1.88
14570--14605
11
3.3
11
100
0
72
36
0
8
55
1.30
15622--15653
15
2.1
15
100
0
64
28
56
15
0
1.40
15692--15818
16
7.9
16
76
13
127
34
37
18
10
1.84
15692--15807
32
3.6
32
88
0
169
33
37
18
10
1.84
17150--17231
42
2.0
42
90
0
128
40
19
4
35
1.73
17471--17590
16
7.6
16
82
1
161
38
36
17
7
1.78
18320--18356
2
19.0
2
94
5
67
48
0
0
51
1.00
19751--19784
2
17.0
2
93
0
59
47
0
2
50
1.16
23235--23355
44
2.8
44
84
5
172
22
11
25
40
1.87
34281--34317
10
3.5
11
85
7
51
37
8
24
29
1.84
37128--37153
13
2.0
13
100
0
52
15
7
7
69
1.35
42911--42962
24
2.2
24
82
0
59
36
23
17
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43156--43241
24
3.6
24
80
0
91
18
31
30
19
1.96
43289--43357
32
2.2
31
87
7
102
20
18
23
37
1.94
43296--43361
32
2.1
32
94
0
114
18
18
27
36
1.94
45815--45869
24
2.3
24
93
6
94
18
25
23
32
1.97
46717--47149
216
2.0
215
97
0
821
39
21
12
26
1.88
47617--47708
28
3.4
28
88
4
136
32
11
47
7
1.69
54001--54040
21
1.9
21
89
0
62
32
20
27
20
1.97
55007--55051
25
1.9
24
86
13
67
60
13
8
17
1.58
66875--67179
155
2.0
155
100
0
610
33
14
24
27
1.94
77846--77875
10
3.0
10
90
0
51
30
10
16
43
1.81

Tables:   1

The End!