Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008023.1 Corchorus capsularis cultivar CVL-1 contig08044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3028
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35


Found at i:1631 original size:21 final size:21

Alignment explanation


    Indices: 1587--1635  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1577 GCATTGGAGT

                       * *     * 
       1587 ACATGGGGTGCGAGGCAAATC
          1 ACATGGGGTGCCAAGCAAAGC

                             *   
       1608 ACATGGGGTGCCAAGCATAGC
          1 ACATGGGGTGCCAAGCAAAGC

                   
       1629 ACATGGG
          1 ACATGGG

       1636 CGCCCAACGC


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.29, C:0.20, G:0.37, T:0.14


Consensus pattern (21 bp):   
ACATGGGGTGCCAAGCAAAGC
Done.