genome.fa.s8025.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008025.1 Corchorus capsularis cultivar CVL-1 contig08046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47747

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689--795	33	3.2	33	88	2	144	10	28	38	22	1.87
3010--3077	7	10.0	7	81	10	70	76	0	22	1	0.87
3020--3077	6	9.7	6	78	16	50	79	0	18	1	0.82
3011--3077	27	2.4	29	82	12	86	77	0	20	1	0.85
3132--3443	156	2.0	155	98	0	597	31	22	21	24	1.98
4084--4130	14	3.4	14	70	5	51	29	8	2	59	1.39
3962--4263	151	2.0	152	90	1	482	35	6	3	53	1.45
7913--7942	3	10.0	3	100	0	60	66	0	0	33	0.92
10988--11031	14	3.2	14	75	18	56	13	15	6	63	1.49
10982--11025	14	3.2	14	75	18	56	11	15	9	63	1.51
10982--11039	27	2.1	27	93	0	98	10	20	8	60	1.55
13306--13487	60	3.0	60	83	4	190	43	23	22	9	1.83
13421--13605	90	2.1	90	97	0	352	42	24	27	6	1.79
13599--13714	60	1.9	60	96	0	214	41	24	27	6	1.80
13686--13742	27	2.1	27	96	0	105	36	31	26	5	1.79
13626--13801	87	2.0	87	91	0	280	40	25	27	6	1.81
13594--13991	138	2.8	139	88	4	557	42	22	27	7	1.80
13713--13852	60	2.3	60	91	0	226	42	22	28	7	1.80
13778--13930	78	2.0	78	89	2	236	45	22	22	8	1.79
13856--14115	60	4.3	60	84	1	315	43	21	26	8	1.82
18008--18035	14	2.0	14	100	0	56	42	0	0	57	0.99
22984--23095	40	2.8	41	80	5	138	33	14	19	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23668--23742	31	2.4	31	86	8	98	49	5	14	30	1.66
23979--24094	43	2.7	43	94	1	198	42	20	19	17	1.90
27607--27947	170	2.0	170	97	1	648	41	12	15	30	1.84
32845--32918	27	2.7	27	91	0	112	28	35	16	20	1.94
34681--34814	31	4.4	31	74	12	116	39	17	18	24	1.92
34650--34779	60	2.2	59	88	1	188	39	17	16	26	1.91
34651--34749	29	3.3	29	68	15	85	38	17	17	27	1.91
34740--34814	31	2.5	31	91	2	125	40	17	18	24	1.91
34841--35006	31	5.5	30	71	16	137	27	20	18	34	1.95
34838--35005	60	2.8	60	88	6	261	27	20	18	33	1.96
34873--34974	29	3.4	29	69	19	84	26	21	19	32	1.97
35336--35396	26	2.4	26	82	15	83	31	22	6	39	1.80
46222--46272	16	3.4	16	71	20	56	45	1	23	29	1.64
46222--46276	28	2.0	28	96	0	101	41	3	25	29	1.72

Tables:   1

The End!