Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008028.1 Corchorus capsularis cultivar CVL-1 contig08049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79545

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2104--2139
19
1.9
18
88
5
54
41
2
22
33
1.68
3777--3836
21
2.9
21
94
0
102
16
35
40
8
1.79
11695--11754
30
2.0
30
96
0
111
18
30
18
33
1.95
11695--11774
30
2.7
30
86
0
97
16
25
21
37
1.93
19692--20054
114
3.2
112
81
8
328
33
20
22
23
1.97
19765--20054
114
2.5
113
87
4
388
34
20
22
22
1.97
20031--20117
31
2.8
31
87
0
111
19
22
33
24
1.97
20184--20437
84
3.0
84
87
8
292
41
8
0
50
1.36
20319--20387
23
3.0
24
75
14
72
49
2
0
47
1.16
33418--33465
21
2.3
21
81
0
60
25
33
18
22
1.97
35136--35198
26
2.4
26
83
2
81
69
0
26
3
1.03
35138--35198
31
1.9
32
86
3
88
70
0
26
3
1.02
58053--58096
2
22.5
2
86
4
63
43
0
4
52
1.22
58947--58990
11
4.1
11
77
16
56
29
18
18
34
1.94
59089--59147
30
2.0
30
86
6
84
23
28
16
30
1.97
59490--59595
33
3.3
33
93
3
173
44
20
10
24
1.83
59586--59725
33
4.2
33
83
1
129
42
22
9
25
1.83
59487--59628
66
2.2
63
80
6
151
42
22
9
25
1.84
62048--62072
8
3.1
8
100
0
50
24
24
16
36
1.94
67905--67965
17
3.8
17
77
14
67
18
6
34
40
1.76
67899--67975
32
2.4
32
86
4
111
19
7
33
38
1.81
67899--67981
16
5.2
15
71
22
62
18
7
34
39
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68870--68916
16
2.9
16
83
0
58
14
10
23
51
1.74
68846--68921
16
4.8
16
74
7
57
14
11
25
48
1.77
69516--69541
13
2.0
13
100
0
52
0
7
0
92
0.39
73983--74020
19
2.1
19
90
5
60
73
0
23
2
0.95
76257--76329
21
3.4
21
72
25
64
20
15
8
56
1.64
76260--76608
43
8.0
42
77
12
267
18
18
6
56
1.63
76335--76390
15
3.9
15
69
9
53
17
19
5
57
1.59
76368--76656
22
13.5
21
72
12
196
19
19
6
55
1.64
76922--77040
34
3.4
34
73
11
123
26
15
8
48
1.74
76898--77052
71
2.2
71
89
0
238
25
19
8
46
1.78
77018--77482
55
8.5
55
96
0
788
24
19
7
47
1.75
77479--77538
22
2.7
22
87
5
77
21
20
5
53
1.64
77547--77628
30
2.6
32
84
7
105
26
19
8
45
1.79

Tables:   1

The End!