Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000803.1 Corchorus capsularis cultivar CVL-1 contig00803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6959
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31


Found at i:610 original size:40 final size:40

Alignment explanation


    Indices: 552--627  Score: 125
    Period size: 40  Copynumber: 1.9  Consensus size: 40

        542 TCCCTCCTTA

                         *                          
        552 ATAATTAAGGAAATAAATTAAATCCAGGTTTAGCCCCCTG
          1 ATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCCCCTG

                      *             *           
        592 ATAATTAAGGTAAGAAATTAAATCTAGGTTTAGCCC
          1 ATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCC

        628 TAAATCCCTT


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  40   33  1.00

ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29


Consensus pattern (40 bp):   
ATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCCCCTG
Done.