Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008030.1 Corchorus capsularis cultivar CVL-1 contig08051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10067
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:7436 original size:2 final size:2

Alignment explanation


    Indices: 7424--7457  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       7414 TCTTCTCGTA

                  *                                           
       7424 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       7458 TTCTGACTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
AT

Done.