Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008033.1 Corchorus capsularis cultivar CVL-1 contig08054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31532

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432--473
4
10.5
4
100
0
84
26
47
0
26
1.52
5676--5734
30
2.0
30
93
0
100
20
13
22
44
1.86
7766--7800
11
3.2
11
91
0
61
80
17
2
0
0.84
7844--7868
13
1.9
13
100
0
50
56
0
0
44
0.99
10574--10656
36
2.3
36
87
2
114
31
1
21
45
1.60
10591--10652
32
2.0
31
93
3
106
30
1
20
46
1.60
10635--10670
2
18.0
2
88
11
56
50
0
2
47
1.15
14152--14212
2
30.5
2
100
0
122
50
49
0
0
1.00
20761--20792
15
2.1
15
100
0
64
28
18
12
40
1.87
21944--22032
47
2.0
45
86
6
126
28
12
14
44
1.81
22065--22125
32
1.9
32
89
0
95
36
9
18
36
1.84

Tables:   1

The End!